Gm40402 Gene Detail

Summary

• Symbol
  Gm40402
• Name
  predicted gene, 40402

• Feature Type
  lncRNA gene
• IDs
  MGI:5623287
  NCBI Gene: 105244871
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr6:127756159-127791271 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  811 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623287	lncRNA gene	Chr6:127756159-127791271 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  105244871

Representative Sequences			Length	Strain/Species
genomic	105244871	NCBI Gene Model | MGI Sequence Detail	35113	C57BL/6J
transcript	XR_001785370	RefSeq | MGI Sequence Detail	19954	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm40402:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59045	Chr6:127767313-127767318 (+)	11,157 bp
Tssr59046	Chr6:127773380-127773399 (+)	17,231 bp
Tssr59047	Chr6:127773405-127773416 (+)	17,252 bp
Tssr59048	Chr6:127773418-127773439 (+)	17,270 bp
Tssr59049	Chr6:127773445-127773454 (+)	17,291 bp
Tssr59050	Chr6:127773459-127773463 (+)	17,302 bp