Gm40414 Pseudogene Detail

Summary

• Symbol
  Gm40414
• Name
  predicted gene, 40414

• Feature Type
  pseudogene
• IDs
  MGI:5623299
  NCBI Gene: 105244886
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:68711165-68711645 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  290 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623299	pseudogene	Chr6:68711165-68711645 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013533	pseudogene	Chr6:68974495-68974975 (-)
A/J	MGP_AJ_G0013520	pseudogene	Chr6:66039919-66040399 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0013499	pseudogene	Chr6:66359424-66359904 (-)
C3H/HeJ	MGP_C3HHeJ_G0013437	pseudogene	Chr6:116134392-116134872 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013886	pseudogene	Chr6:70663401-70663881 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0013317	pseudogene	Chr6:73440855-73441335 (-)
DBA/2J	MGP_DBA2J_G0013397	pseudogene	Chr6:65654493-65654973 (-)
FVB/NJ	MGP_FVBNJ_G0013400	pseudogene	Chr6:65097178-65097658 (-)
LP/J	MGP_LPJ_G0013469	pseudogene	Chr6:68808648-68809134 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0013877	pseudogene	Chr6:68102322-68102802 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0013097	pseudogene	Chr6:68378732-68379223 (-)

Homology

• Gene Tree
  Gm40414
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14

• Ensembl
  ENSMUSG00000106309 (Evidence)
• NCBI Gene
  105244886

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106309	Ensembl Gene Model | MGI Sequence Detail	481	C57BL/6J
transcript	ENSMUST00000197608	Ensembl | MGI Sequence Detail	481	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;