Gm40446 Gene Detail

Summary

• Symbol
  Gm40446
• Name
  predicted gene, 40446

• Feature Type
  lncRNA gene
• IDs
  MGI:5623331
  NCBI Gene: 105244924
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr12:77175795-77238492 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1565 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623331	lncRNA gene	Chr12:77175795-77238492 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving Gm40446
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  3

• NCBI Gene
  105244924

Representative Sequences			Length	Strain/Species
genomic	105244924	NCBI Gene Model | MGI Sequence Detail	62698	C57BL/6J
transcript	XR_872838	RefSeq | MGI Sequence Detail	1113	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm40446:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116785	Chr12:77238496-77238498 (-)	-5 bp
Tssr116784	Chr12:77224176-77224187 (-)	14,310 bp
Tssr116783	Chr12:77213682-77213688 (-)	24,807 bp
Tssr116782	Chr12:77181109-77181130 (-)	57,372 bp