Gm40614 Gene Detail

Summary

• Symbol
  Gm40614
• Name
  predicted gene, 40614

• Feature Type
  lncRNA gene
• IDs
  MGI:5623499
  NCBI Gene: 105245120
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:24001721-24008382 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  322 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623499	lncRNA gene	Chr10:23999112-24008385 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005109	lincRNA gene	Chr10:22078491-22084985 (+)
A/J	MGP_AJ_G0005092	lincRNA gene	Chr10:21431262-21438352 (+)
AKR/J	MGP_AKRJ_G0005070	lincRNA gene	Chr10:21781169-21787531 (+)
BALB/cJ	MGP_BALBcJ_G0005073	lincRNA gene	Chr10:21518342-21524702 (+)
C3H/HeJ	MGP_C3HHeJ_G0005022	lincRNA gene	Chr10:21996768-22003787 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005223	lincRNA gene	Chr10:22767863-22776964 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004629	lincRNA gene	Chr10:20148086-20153788 (+)
CAST/EiJ	MGP_CASTEiJ_G0004969	lincRNA gene	Chr10:21912872-21919230 (+)
CBA/J	MGP_CBAJ_G0005012	lincRNA gene	Chr10:23784894-23795646 (+)
DBA/2J	MGP_DBA2J_G0005031	lincRNA gene	Chr10:21167285-21173800 (+)
FVB/NJ	MGP_FVBNJ_G0005053	lincRNA gene	Chr10:20885430-20892302 (+)
LP/J	MGP_LPJ_G0005110	lincRNA gene	Chr10:22082186-22088429 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005036	lincRNA gene	Chr10:23907785-23914143 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005230	lincRNA gene	Chr10:21650138-21657726 (+)
PWK/PhJ	MGP_PWKPhJ_G0004920	lincRNA gene	Chr10:20943954-20950370 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004845	lincRNA gene	Chr10:21458595-21465005 (+)
WSB/EiJ	MGP_WSBEiJ_G0005016	lincRNA gene	Chr10:21758026-21764969 (+)

Homology

• Gene Tree
  Gm40614
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving Gm40614
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000085451 (Evidence)
• NCBI Gene
  105245120

Representative Sequences			Length	Strain/Species
genomic	105245120	NCBI Gene Model | MGI Sequence Detail	6662	C57BL/6J
transcript	NR_168522	RefSeq | MGI Sequence Detail	828	ZRU/MplStud

References

• Summaries
  All 10

  Phenotypes 7
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm40614:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97063	Chr10:24008376-24008395 (-)	-4 bp