Gm40943 Gene Detail

Summary

• Symbol
  Gm40943
• Name
  predicted gene, 40943

• Feature Type
  lncRNA gene
• IDs
  MGI:5623828
  NCBI Gene: 105245495
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr13:49323284-49337301 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  449 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623828	lncRNA gene	Chr13:49323284-49337301 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm40943
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  2

• NCBI Gene
  105245495

Representative Sequences			Length	Strain/Species
genomic	105245495	NCBI Gene Model | MGI Sequence Detail	14018	C57BL/6J
transcript	XR_873376	RefSeq | MGI Sequence Detail	498	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for Gm40943:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr122444	Chr13:49337444-49337451 (-)	-147 bp
Tssr122443	Chr13:49337404-49337433 (-)	-118 bp
Tssr122442	Chr13:49337324-49337333 (-)	-28 bp
Tssr122441	Chr13:49337265-49337276 (-)	30 bp
Tssr122440	Chr13:49337195-49337208 (-)	99 bp