Gm41408 Gene Detail

Summary

• Symbol
  Gm41408
• Name
  predicted gene, 41408

• Feature Type
  protein coding gene
• IDs
  MGI:5624293
  NCBI Gene: 105246049
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr15:96349790-96363758 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  415 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624293	protein coding gene	Chr15:96349790-96363758 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  9
• Chemically induced (other)
  1
• Gene trapped
  8
• Genomic Mutations
  1 involving Gm41408
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  2

• NCBI Gene
  105246049

Representative Sequences			Length	Strain/Species
genomic	105246049	NCBI Gene Model | MGI Sequence Detail	13969	C57BL/6J
transcript	AK044630	GenBank | ENA | DDBJ | MGI Sequence Detail	2429	C57BL/6J
polypeptide	XP_030104726	RefSeq | MGI Sequence Detail	323	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm41408:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr4705	Chr15:96355113-96355127 (+)	5,330 bp
Tssr132828	Chr15:96358089-96358106 (+)	8,308 bp
Tssr132829	Chr15:96359318-96359335 (+)	9,537 bp