Gm41410 Gene Detail

Summary

• Symbol
  Gm41410
• Name
  predicted gene, 41410

• Feature Type
  lncRNA gene
• IDs
  MGI:5624295
  NCBI Gene: 105246059
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr16:3713043-3726517 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  282 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624295	lncRNA gene	Chr16:3713043-3726517 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  105246059

Representative Sequences			Length	Strain/Species
genomic	105246059	NCBI Gene Model | MGI Sequence Detail	13475	C57BL/6J
transcript	NR_153801	RefSeq | MGI Sequence Detail	661	ZRU/MplStud

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm41410:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139738	Chr16:3726503-3726550 (-)	-10 bp
Tssr139737	Chr16:3726460-3726475 (-)	49 bp
Tssr139736	Chr16:3726381-3726407 (-)	123 bp
Tssr139735	Chr16:3725600-3725610 (-)	912 bp
Tssr4778	Chr16:3725587-3725595 (-)	926 bp
Tssr139734	Chr16:3725574-3725581 (-)	939 bp
Tssr139733	Chr16:3725559-3725571 (-)	952 bp
Tssr139732	Chr16:3713425-3713460 (-)	13,074 bp