Gm41461 Gene Detail

Summary

• Symbol
  Gm41461
• Name
  predicted gene, 41461

• Feature Type
  lncRNA gene
• IDs
  MGI:5624346
  NCBI Gene: 105246120
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr16:52168165-52193125 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  826 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624346	lncRNA gene	Chr16:52168165-52193125 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  105246120

Representative Sequences			Length	Strain/Species
genomic	105246120	NCBI Gene Model | MGI Sequence Detail	24961	C57BL/6J
transcript	XR_876105	RefSeq | MGI Sequence Detail	24216	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm41461:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141439	Chr16:52193060-52193065 (-)	62 bp
Tssr141438	Chr16:52187237-52187244 (-)	5,884 bp
Tssr141437	Chr16:52186809-52186818 (-)	6,311 bp
Tssr141436	Chr16:52182249-52182251 (-)	10,875 bp
Tssr141435	Chr16:52176500-52176549 (-)	16,600 bp
Tssr141434	Chr16:52176433-52176477 (-)	16,670 bp
Tssr141433	Chr16:52176249-52176288 (-)	16,856 bp
Tssr141432	Chr16:52174635-52174650 (-)	18,482 bp