Gm41485 Gene Detail

Summary

• Symbol
  Gm41485
• Name
  predicted gene, 41485

• Feature Type
  lncRNA gene
• IDs
  MGI:5624370
  NCBI Gene: 105246149
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr16:87398577-87409251 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  489 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624370	lncRNA gene	Chr16:87398577-87413171 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm41485
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  1
• Genomic Mutations
  2 involving Gm41485
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  2

• Ensembl
  ENSMUSG00000120450 (Evidence)
• NCBI Gene
  105246149

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120450	Ensembl Gene Model | MGI Sequence Detail	10675	C57BL/6J
transcript	ENSMUST00000243391	Ensembl | MGI Sequence Detail	2082	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76
• Latest
  J:335294 Redhead Y, et al., Craniofacial dysmorphology in Down syndrome is caused by increased dosage of Dyrk1a and at least three other genes. Development. 2023 Apr 15;150(8):dev201077

TSS for Gm41485:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141944	Chr16:87409447-87409452 (-)	-199 bp
Tssr141943	Chr16:87409227-87409238 (-)	18 bp