Gm41659 Gene Detail

Summary

• Symbol
  Gm41659
• Name
  predicted gene, 41659

• Feature Type
  lncRNA gene
• IDs
  MGI:5624544
  NCBI Gene: 105246360
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr18:4908916-4912273 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624544	lncRNA gene	Chr18:4869777-4912273 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm41659
  

Sequences &
Gene Models

• All Sequences
  9
• RefSeq
  3

• Ensembl
  ENSMUSG00000120077 (Evidence)
• NCBI Gene
  105246360

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120077	Ensembl Gene Model | MGI Sequence Detail	3358	C57BL/6J
transcript	ENSMUST00000241253	Ensembl | MGI Sequence Detail	993	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm41659:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149918	Chr18:4908906-4908940 (+)	7 bp
Tssr149919	Chr18:4908944-4908963 (+)	38 bp
Tssr149920	Chr18:4908965-4908974 (+)	54 bp
Tssr5237	Chr18:4909199-4909207 (+)	287 bp