Gm41699 Gene Detail

Summary

• Symbol
  Gm41699
• Name
  predicted gene, 41699

• Feature Type
  lncRNA gene
• IDs
  MGI:5624584
  NCBI Gene: 105246407
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr18:36831335-36852015 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  700 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624584	lncRNA gene	Chr18:36831335-36852015 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  8
• Gene trapped
  8
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  105246407

Representative Sequences			Length	Strain/Species
genomic	105246407	NCBI Gene Model | MGI Sequence Detail	20681	C57BL/6J
transcript	XR_877320	RefSeq | MGI Sequence Detail	492	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:137511 Lin Q, et al., Mutagenesis of diploid mammalian genes by gene entrapment. Nucleic Acids Res. 2006;34(20):e139

TSS for Gm41699:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150652	Chr18:36835486-36835505 (+)	4,161 bp
Tssr150653	Chr18:36842259-36842277 (+)	10,933 bp
Tssr150654	Chr18:36842282-36842293 (+)	10,953 bp
Tssr150655	Chr18:36846722-36846771 (+)	15,412 bp