Gm41890 Gene Detail

Summary

• Symbol
  Gm41890
• Name
  predicted gene, 41890

• Feature Type
  lncRNA gene
• IDs
  MGI:5624775
  NCBI Gene: 105246625
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  ChrX:12833827-12860723 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  628 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624775	lncRNA gene	ChrX:12833827-12860723 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  118
• Gene trapped
  118
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  105246625

Representative Sequences			Length	Strain/Species
genomic	105246625	NCBI Gene Model | MGI Sequence Detail	26897	C57BL/6J
transcript	XR_878062	RefSeq | MGI Sequence Detail	277	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm41890:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163010	ChrX:12860884-12860893 (-)	-166 bp
Tssr163009	ChrX:12860792-12860801 (-)	-74 bp
Tssr163008	ChrX:12860760-12860769 (-)	-42 bp