Gm41958 Gene Detail

Summary

• Symbol
  Gm41958
• Name
  predicted gene, 41958

• Feature Type
  unclassified non-coding RNA gene
  BioType Conflict
  
• IDs
  MGI:5624843
  NCBI Gene: 105246714
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr1:136589917-136610463 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  652 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624843	unclassified non-coding RNA gene	Chr1:136589917-136610463 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  14
• Chemically induced (other)
  2
• Gene trapped
  11
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm41958
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  7
• RefSeq
  4

• NCBI Gene
  105246714

Representative Sequences			Length	Strain/Species
genomic	105246714	NCBI Gene Model | MGI Sequence Detail	20547	C57BL/6J
transcript	KY467512	GenBank | ENA | DDBJ | MGI Sequence Detail	677	ZRU/MplStud

References

• Summaries
  All 8

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm41958:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9080	Chr1:136589884-136589897 (+)	-26 bp
Tssr9081	Chr1:136602428-136602437 (+)	12,516 bp
Tssr9082	Chr1:136604151-136604181 (+)	14,249 bp
Tssr9083	Chr1:136604900-136604952 (+)	15,009 bp
Tssr9084	Chr1:136604982-136604987 (+)	15,068 bp
Tssr9085	Chr1:136605878-136605892 (+)	15,968 bp
Tssr9086	Chr1:136605896-136605919 (+)	15,991 bp
Tssr9087	Chr1:136608194-136608214 (+)	18,287 bp