Gm42196 Gene Detail

Summary

• Symbol
  Gm42196
• Name
  predicted gene, 42196
• Synonyms
  Gm45681

• Feature Type
  lncRNA gene
• IDs
  MGI:5625081
  NCBI Gene: 105247012
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:28230571-28265526 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  913 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5625081	lncRNA gene	Chr3:28230571-28266358 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm42196
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  2

• Ensembl
  ENSMUSG00000109716 (Evidence)
• NCBI Gene
  105247012

Representative Sequences			Length	Strain/Species
genomic	105247012	NCBI Gene Model | MGI Sequence Detail	34956	C57BL/6J
transcript	XR_004941428	RefSeq | MGI Sequence Detail	792	C57BL/6J

Other
Accession IDs

MGI:5791517

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;