Gm42274 Gene Detail

Summary

• Symbol
  Gm42274
• Name
  predicted gene, 42274

• Feature Type
  lncRNA gene
• IDs
  MGI:5625159
  NCBI Gene: 105247116
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:41743188-41755772 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  355 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5625159	lncRNA gene	Chr4:41743188-41755772 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Gm42274
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  1

• NCBI Gene
  105247116

Representative Sequences			Length	Strain/Species
genomic	105247116	NCBI Gene Model | MGI Sequence Detail	12585	C57BL/6J
transcript	NR_155499	RefSeq | MGI Sequence Detail	2384	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:192799 Cattanach BM, et al., A further duplication involving chromosome 4, Dp(4)20H. Mouse Genome. 1996;94(3):680
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm42274:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr41378	Chr4:41745100-41745113 (-)	10,665 bp