Halr1os1 Gene Detail

Summary

• Symbol
  Halr1os1
• Name
  Hoxa adjacent long noncoding RNA 1, opposite strand 1

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:5636487
  NCBI Gene: 106007486
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:52081784-52083140 bp, + strand

  From MGI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5636487	unclassified non-coding RNA gene	Chr6:52081784-52083140 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  2

• NCBI Gene
  106007486

Representative Sequences			Length	Strain/Species
transcript	KR348518	GenBank | ENA | DDBJ | MGI Sequence Detail	1357	Not Specified

References

• Summaries
  All 3
• Earliest
  J:355966 De Kumar B, et al., Analysis of dynamic changes in retinoid-induced transcription and epigenetic profiles of murine Hox clusters in ES cells. Genome Res. 2015 Aug;25(8):1229-43

TSS for Halr1os1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56497	Chr6:52080943-52080954 (+)	-835 bp
Tssr56498	Chr6:52080955-52080960 (+)	-826 bp