Hobbit1 Gene Detail

Summary

• Symbol
  Hobbit1
• Name
  Hoxb4-Hoxb5 intergenic transcript 1

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:5636489
  NCBI Gene: 106007487
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:96203361-96205533 bp, + strand

  From MGI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5636489	unclassified non-coding RNA gene	Chr11:96203361-96205533 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Expression

• Literature Summary
  1

Sequences &
Gene Models

• All Sequences
  2

• NCBI Gene
  106007487

Representative Sequences			Length	Strain/Species
transcript	KR231012	GenBank | ENA | DDBJ | MGI Sequence Detail	2173	C57BL/6 x 129/Sv

References

• Summaries
  All 4

  Developmental Gene Expression 1
• Earliest
  J:355966 De Kumar B, et al., Analysis of dynamic changes in retinoid-induced transcription and epigenetic profiles of murine Hox clusters in ES cells. Genome Res. 2015 Aug;25(8):1229-43
• Latest
  J:336097 Afzal Z, et al., Shared retinoic acid responsive enhancers coordinately regulate nascent transcription of Hoxb coding and non-coding RNAs in the developing mouse neural tube. Development. 2023 May 15;150(10)