Hotairm2 Gene Detail

Summary

• Symbol
  Hotairm2
• Name
  Hoxa transcript antisense RNA, myeloid-specific 2

• Feature Type
  lncRNA gene
• IDs
  MGI:5636492
  NCBI Gene: 106007488
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:52133882-52135509 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  59 from dbSNP Build 142

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	no annotation
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  1

• NCBI Gene
  106007488

Representative Sequences			Length	Strain/Species
genomic	106007488	NCBI Gene Model | MGI Sequence Detail	1628	C57BL/6J
transcript	NR_146400	RefSeq | MGI Sequence Detail	410	ZRU/MplStud

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:355966 De Kumar B, et al., Analysis of dynamic changes in retinoid-induced transcription and epigenetic profiles of murine Hox clusters in ES cells. Genome Res. 2015 Aug;25(8):1229-43