Gm42495 Gene Detail

Summary

• Symbol
  Gm42495
• Name
  predicted gene 42495

• Feature Type
  lncRNA gene
• IDs
  MGI:5662632
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:128521480-128524795 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  285 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662632	lncRNA gene	Chr5:128521480-128524795 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006821	lincRNA gene	Chr5:132455251-132458542 (+)
A/J	MGP_AJ_G0006815	lincRNA gene	Chr5:126895499-126899320 (+)
AKR/J	MGP_AKRJ_G0006785	lincRNA gene	Chr5:131023710-131028273 (+)
BALB/cJ	MGP_BALBcJ_G0006791	lincRNA gene	Chr5:128241797-128245827 (+)
C3H/HeJ	MGP_C3HHeJ_G0006736	lincRNA gene	Chr5:131585409-131589648 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006955	lincRNA gene	Chr5:137535107-137539463 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006211	lincRNA gene	Chr5:121324426-121326521 (+)
CAST/EiJ	MGP_CASTEiJ_G0006658	lincRNA gene	Chr5:130827822-130832782 (+)
CBA/J	MGP_CBAJ_G0006718	lincRNA gene	Chr5:142912191-142915457 (+)
DBA/2J	MGP_DBA2J_G0006738	lincRNA gene	Chr5:126884650-126887931 (+)
FVB/NJ	MGP_FVBNJ_G0006762	lincRNA gene	Chr5:125933128-125936485 (+)
LP/J	MGP_LPJ_G0006822	lincRNA gene	Chr5:132966872-132972612 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006745	lincRNA gene	Chr5:146302707-146306883 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006958	lincRNA gene	Chr5:130676821-130680087 (+)
PWK/PhJ	MGP_PWKPhJ_G0006598	lincRNA gene	Chr5:125771067-125774409 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006504	lincRNA gene	Chr5:128233200-128238049 (+)
WSB/EiJ	MGP_WSBEiJ_G0006709	lincRNA gene	Chr5:131331093-131337318 (+)

Homology

• Gene Tree
  Gm42495
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm42495
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106275 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106275	Ensembl Gene Model | MGI Sequence Detail	3316	C57BL/6J
transcript	ENSMUST00000200324	Ensembl | MGI Sequence Detail	405	Not Applicable

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm42495:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1641	Chr5:128521401-128521410 (+)	-74 bp