Gm42576 Gene Detail

Summary

• Symbol
  Gm42576
• Name
  predicted gene 42576

• Feature Type
  unclassified gene
• IDs
  MGI:5662713
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:75180897-75183742 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662713	unclassified gene	Chr5:75180897-75183742 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0001634	unclassified gene	Chr5:75130141-75132986 (-)
A/J	MGP_AJ_G0001615	unclassified gene	Chr5:72276450-72279295 (-)
AKR/J	MGP_AKRJ_G0001600	unclassified gene	Chr5:74630413-74633258 (-)
BALB/cJ	MGP_BALBcJ_G0001611	unclassified gene	Chr5:72985514-72988359 (-)
C3H/HeJ	MGP_C3HHeJ_G0001588	unclassified gene	Chr5:75013799-75016645 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0001728	unclassified gene	Chr5:78159126-78161971 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001408	unclassified gene	Chr5:67949015-67951858 (-)
CAST/EiJ	MGP_CASTEiJ_G0001561	unclassified gene	Chr5:74128016-74130861 (-)
CBA/J	MGP_CBAJ_G0001579	unclassified gene	Chr5:80741737-80744583 (-)
DBA/2J	MGP_DBA2J_G0001582	unclassified gene	Chr5:72357355-72360201 (-)
FVB/NJ	MGP_FVBNJ_G0001591	unclassified gene	Chr5:71508994-71511839 (-)
LP/J	MGP_LPJ_G0001638	unclassified gene	Chr5:75557581-75560426 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001573	unclassified gene	Chr5:83960782-83963627 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001718	unclassified gene	Chr5:74165021-74167866 (-)
PWK/PhJ	MGP_PWKPhJ_G0001519	unclassified gene	Chr5:71346951-71349796 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0001486	unclassified gene	Chr5:73522897-73525738 (-)
WSB/EiJ	MGP_WSBEiJ_G0001579	unclassified gene	Chr5:74456421-74459266 (-)

Homology

• Gene Tree
  Gm42576
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000107205 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107205	Ensembl Gene Model | MGI Sequence Detail	2846	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42576:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51394	Chr5:75185684-75185687 (-)	-1,944 bp