Gm42604 Gene Detail

Summary

• Symbol
  Gm42604
• Name
  predicted gene 42604

• Feature Type
  lncRNA gene
• IDs
  MGI:5662741
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:96883406-96887223 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  258 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662741	lncRNA gene	Chr5:96883406-96887223 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004116	antisense lncRNA gene	Chr5:97977708-97981543 (-)
A/J	MGP_AJ_G0004097	antisense lncRNA gene	Chr5:94378711-94382546 (-)
AKR/J	MGP_AKRJ_G0004076	antisense lncRNA gene	Chr5:97536284-97540119 (-)
BALB/cJ	MGP_BALBcJ_G0004083	antisense lncRNA gene	Chr5:95387227-95391062 (-)
C3H/HeJ	MGP_C3HHeJ_G0004030	antisense lncRNA gene	Chr5:97860325-97864160 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004231	antisense lncRNA gene	Chr5:102143116-102146933 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003707	antisense lncRNA gene	Chr5:89760327-89764164 (-)
CAST/EiJ	MGP_CASTEiJ_G0003993	antisense lncRNA gene	Chr5:96448072-96452077 (-)
CBA/J	MGP_CBAJ_G0004024	antisense lncRNA gene	Chr5:105667191-105671026 (-)
DBA/2J	MGP_DBA2J_G0004039	antisense lncRNA gene	Chr5:94594364-94598199 (-)
FVB/NJ	MGP_FVBNJ_G0004057	antisense lncRNA gene	Chr5:93416442-93420277 (-)
LP/J	MGP_LPJ_G0004118	antisense lncRNA gene	Chr5:98632411-98636246 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004046	antisense lncRNA gene	Chr5:110732730-110736565 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004227	antisense lncRNA gene	Chr5:96973142-96976977 (-)
PWK/PhJ	MGP_PWKPhJ_G0003946	antisense lncRNA gene	Chr5:92980141-92983979 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003890	antisense lncRNA gene	Chr5:94611821-94615650 (-)
WSB/EiJ	MGP_WSBEiJ_G0004028	antisense lncRNA gene	Chr5:97277452-97281280 (-)

Homology

• Gene Tree
  Gm42604
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106526 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106526	Ensembl Gene Model | MGI Sequence Detail	3818	C57BL/6J
transcript	ENSMUST00000200077	Ensembl | MGI Sequence Detail	801	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42604:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51964	Chr5:96887523-96887545 (-)	-311 bp