Gm42621 Pseudogene Detail

Summary

• Symbol
  Gm42621
• Name
  predicted gene 42621

• Feature Type
  pseudogene
• IDs
  MGI:5662758
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:88344847-88349266 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  302 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662758	pseudogene	Chr5:88344847-88349266 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040403	pseudogene	Chr5:89211580-89216045 (+)
A/J	MGP_AJ_G0040385	pseudogene	Chr5:85557548-85561967 (+)
AKR/J	MGP_AKRJ_G0040316	pseudogene	Chr5:88337399-88396216 (+)
BALB/cJ	MGP_BALBcJ_G0040390	pseudogene	Chr5:86562572-86566991 (+)
C3H/HeJ	MGP_C3HHeJ_G0040009	pseudogene	Chr5:88744653-88858629 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0039975	pseudogene	Chr5:95823261-95888736 (+)
DBA/2J	MGP_DBA2J_G0040184	pseudogene	Chr5:85674252-85755370 (+)
FVB/NJ	MGP_FVBNJ_G0040132	pseudogene	Chr5:84659967-84664741 (+)
LP/J	MGP_LPJ_G0040224	pseudogene	Chr5:89597015-89602384 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm42621
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm42621
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12

• Ensembl
  ENSMUSG00000106065 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106065	Ensembl Gene Model | MGI Sequence Detail	4420	C57BL/6J
transcript	ENSMUST00000198114	Ensembl | MGI Sequence Detail	275	Not Applicable

References

• Summaries
  All 8

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm42621:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46973	Chr5:88344845-88344852 (+)	2 bp