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Gm42642 Pseudogene Detail
Summary
  • Symbol
    Gm42642
  • Name
    predicted gene 42642
  • Feature Type
    pseudogene
  • IDs
    MGI:5662779
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:3182630-3182984 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, Syntenic
Strain
Comparison
more
  • SNPs within 2kb
    105 from dbSNP Build 142
  • Strain Annotations
    7
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5662779
 pseudogene Chr6:3182630-3182984 (-)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0010462
 pseudogene Chr10:19226165-19226519 (-)
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0013574
 pseudogene Chr9:126984-127373 (+)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0013981
 pseudogene Chr9:24480-24869 (+)
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0010380
 pseudogene Chr10:21550555-21550902 (-)
NZO/HlLtJ no annotation
PWK/PhJ MGP_PWKPhJ_G0013014
 pseudogene Chr6:123917110-123917531 (-)
SPRET/EiJ MGP_SPRETEiJ_G0013170
 pseudogene Chr9:176487-176876 (+)
WSB/EiJ no annotation



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    9
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000107185 Ensembl Gene Model | MGI Sequence Detail 355 C57BL/6J ±  kb
transcript ENSMUST00000200683 Ensembl | MGI Sequence Detail 355 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 2
  • Earliest
    J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
  • Latest
    J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory