Gm42669 Gene Detail

Summary

• Symbol
  Gm42669
• Name
  predicted gene 42669

• Feature Type
  protein coding gene
• IDs
  MGI:5662806
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:107655487-107728462 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  1599 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662806	protein coding gene	Chr5:107655487-107728462 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0029840	protein coding gene	Chr5:109553472-109597207 (+)
A/J	MGP_AJ_G0029804	protein coding gene	Chr5:105346292-105389212 (+)
AKR/J	MGP_AKRJ_G0029749	protein coding gene	Chr5:108745200-108790767 (+)
BALB/cJ	MGP_BALBcJ_G0029816	protein coding gene	Chr5:106479738-106522090 (+)
C3H/HeJ	MGP_C3HHeJ_G0029538	protein coding gene	Chr5:109198999-109241655 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0030270	protein coding gene	Chr5:114034674-114080464 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0027504	protein coding gene	Chr5:100420027-100458621 (+)
CAST/EiJ	MGP_CASTEiJ_G0028952	protein coding gene	Chr5:108136174-108180135 (+)
CBA/J	MGP_CBAJ_G0029506	protein coding gene	Chr5:117874330-117920606 (+)
DBA/2J	MGP_DBA2J_G0029652	protein coding gene	Chr5:105481911-105524257 (+)
FVB/NJ	MGP_FVBNJ_G0029609	protein coding gene	Chr5:104212335-104255147 (+)
LP/J	MGP_LPJ_G0029740	protein coding gene	Chr5:110135210-110178918 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0029641	protein coding gene	Chr5:122786819-122831700 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0030304	protein coding gene	Chr5:108309442-108353895 (+)
PWK/PhJ	MGP_PWKPhJ_G0028666	protein coding gene	Chr5:104312190-104329349 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0028503	protein coding gene	Chr5:105828456-105875599 (+)
WSB/EiJ	MGP_WSBEiJ_G0029025	protein coding gene	Chr5:108607144-108656909 (+)

Homology

• Gene Tree
  Gm42669
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm42669
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• UniProt
  2

• Ensembl
  ENSMUSG00000106631 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106631	Ensembl Gene Model | MGI Sequence Detail	72976	C57BL/6J
transcript	ENSMUST00000143074	Ensembl | MGI Sequence Detail	3445	Not Applicable
polypeptide	ENSMUSP00000122032	Ensembl | MGI Sequence Detail	571	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR027857 Protein SPO16 homolog

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17