Gm42671 Gene Detail

Summary

• Symbol
  Gm42671
• Name
  predicted gene 42671

• Feature Type
  unclassified gene
• IDs
  MGI:5662808
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr3:95496282-95497885 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662808	unclassified gene	Chr3:95496282-95497885 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001208	unclassified gene	Chr3:96343746-96345350 (+)
A/J	MGP_AJ_G0001190	unclassified gene	Chr3:93339890-93341493 (+)
AKR/J	MGP_AKRJ_G0001175	unclassified gene	Chr3:95510792-95512395 (+)
BALB/cJ	MGP_BALBcJ_G0001184	unclassified gene	Chr3:93119082-93120688 (+)
C3H/HeJ	MGP_C3HHeJ_G0001162	unclassified gene	Chr3:95805774-95807377 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001298	unclassified gene	Chr3:99894606-99896209 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001006	unclassified gene	Chr3:89673277-89674874 (+)
CAST/EiJ	MGP_CASTEiJ_G0001144	unclassified gene	Chr3:95069932-95071535 (+)
CBA/J	MGP_CBAJ_G0001154	unclassified gene	Chr3:103548702-103550305 (+)
DBA/2J	MGP_DBA2J_G0001158	unclassified gene	Chr3:92628830-92630433 (+)
FVB/NJ	MGP_FVBNJ_G0001168	unclassified gene	Chr3:90702814-90704417 (+)
LP/J	MGP_LPJ_G0001216	unclassified gene	Chr3:97656907-97658511 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001157	unclassified gene	Chr3:109660667-109662271 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001290	unclassified gene	Chr3:95156472-95158075 (+)
PWK/PhJ	MGP_PWKPhJ_G0001102	unclassified gene	Chr3:92515152-92516755 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001077	unclassified gene	Chr3:93439855-93441442 (+)
WSB/EiJ	MGP_WSBEiJ_G0001162	unclassified gene	Chr3:95544455-95546059 (+)

Homology

• Gene Tree
  Gm42671
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000105460 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105460	Ensembl Gene Model | MGI Sequence Detail	1604	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42671:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30604	Chr3:95496271-95496299 (+)	3 bp
Tssr30605	Chr3:95496302-95496320 (+)	29 bp
Tssr30606	Chr3:95496346-95496355 (+)	69 bp