Gm42704 Gene Detail

Summary

• Symbol
  Gm42704
• Name
  predicted gene 42704

• Feature Type
  lncRNA gene
• IDs
  MGI:5662841
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:143356071-143357848 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  60 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662841	lncRNA gene	Chr3:143356071-143357848 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006344	lincRNA gene	Chr3:146908989-146910766 (+)
A/J	MGP_AJ_G0006337	lincRNA gene	Chr3:141710013-141711790 (+)
AKR/J	MGP_AKRJ_G0006312	lincRNA gene	Chr3:145479193-145480970 (+)
BALB/cJ	MGP_BALBcJ_G0006311	lincRNA gene	Chr3:141515811-141517588 (+)
C3H/HeJ	MGP_C3HHeJ_G0006262	lincRNA gene	Chr3:145801371-145803148 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006476	lincRNA gene	Chr3:151989516-151991293 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005771	lincRNA gene	Chr3:136882162-136883908 (+)
CAST/EiJ	MGP_CASTEiJ_G0006196	lincRNA gene	Chr3:145768354-145770131 (+)
CBA/J	MGP_CBAJ_G0006245	lincRNA gene	Chr3:157238458-157240235 (+)
DBA/2J	MGP_DBA2J_G0006266	lincRNA gene	Chr3:140880452-140882229 (+)
FVB/NJ	MGP_FVBNJ_G0006288	lincRNA gene	Chr3:138281254-138283031 (+)
LP/J	MGP_LPJ_G0006348	lincRNA gene	Chr3:148338505-148340282 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006278	lincRNA gene	Chr3:165586036-165587812 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006482	lincRNA gene	Chr3:145095931-145097708 (+)
PWK/PhJ	MGP_PWKPhJ_G0006133	lincRNA gene	Chr3:140683322-140685098 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006046	lincRNA gene	Chr3:143229155-143230936 (+)
WSB/EiJ	MGP_WSBEiJ_G0006242	lincRNA gene	Chr3:145981984-145983761 (+)

Homology

• Gene Tree
  Gm42704
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106109 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106109	Ensembl Gene Model | MGI Sequence Detail	1778	C57BL/6J
transcript	ENSMUST00000196875	Ensembl | MGI Sequence Detail	1778	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;