Gm42716 Gene Detail

Summary

• Symbol
  Gm42716
• Name
  predicted gene 42716

• Feature Type
  lncRNA gene
• IDs
  MGI:5662853
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:44225540-44248196 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  899 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662853	lncRNA gene	Chr5:44225540-44248196 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015596	unclassified non-coding RNA gene	Chr5:42712177-42735906 (-)
A/J	MGP_AJ_G0015572	unclassified non-coding RNA gene	Chr5:41242337-41264995 (-)
AKR/J	MGP_AKRJ_G0015536	unclassified non-coding RNA gene	Chr5:42698153-42720821 (-)
BALB/cJ	MGP_BALBcJ_G0015534	unclassified non-coding RNA gene	Chr5:41711078-41734082 (-)
C3H/HeJ	MGP_C3HHeJ_G0015356	unclassified non-coding RNA gene	Chr5:42680902-42704615 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015988	unclassified non-coding RNA gene	Chr5:44771311-44795873 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013723	unclassified non-coding RNA gene	Chr5:38461839-38483244 (-)
CAST/EiJ	MGP_CASTEiJ_G0014912	unclassified non-coding RNA gene	Chr5:41798449-41821171 (-)
CBA/J	MGP_CBAJ_G0015337	unclassified non-coding RNA gene	Chr5:45953325-45977917 (-)
DBA/2J	MGP_DBA2J_G0015431	unclassified non-coding RNA gene	Chr5:41329207-41351876 (-)
FVB/NJ	MGP_FVBNJ_G0015438	unclassified non-coding RNA gene	Chr5:40755533-40778224 (-)
LP/J	MGP_LPJ_G0015512	unclassified non-coding RNA gene	Chr5:43178323-43202224 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015461	unclassified non-coding RNA gene	Chr5:46762279-46786063 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016030	unclassified non-coding RNA gene	Chr5:42191196-42213843 (-)
PWK/PhJ	MGP_PWKPhJ_G0014697	unclassified non-coding RNA gene	Chr5:40461147-40484030 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014485	unclassified non-coding RNA gene	Chr5:41622065-41644621 (-)
WSB/EiJ	MGP_WSBEiJ_G0015016	unclassified non-coding RNA gene	Chr5:42280571-42304207 (-)

Homology

• Gene Tree
  Gm42716
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000105264 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105264	Ensembl Gene Model | MGI Sequence Detail	22657	C57BL/6J
transcript	ENSMUST00000196555	Ensembl | MGI Sequence Detail	1770	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42716:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50879	Chr5:44246883-44246898 (-)	1,305 bp
Tssr1474	Chr5:44231129-44231140 (-)	17,061 bp
Tssr50878	Chr5:44231103-44231126 (-)	17,081 bp