Gm42744 Gene Detail

Summary

• Symbol
  Gm42744
• Name
  predicted gene 42744
• Synonyms
  Gm30103

• Feature Type
  lncRNA gene
• IDs
  MGI:5662881
  NCBI Gene: 102631881
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:4834753-4849094 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  608 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662881	lncRNA gene	Chr5:4834753-4849094 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006572	lincRNA gene	Chr5:1657601-1677468 (-)
A/J	MGP_AJ_G0006564	lincRNA gene	Chr5:1578816-1593788 (-)
AKR/J	MGP_AKRJ_G0006538	lincRNA gene	Chr5:1588996-1606081 (-)
BALB/cJ	MGP_BALBcJ_G0006538	lincRNA gene	Chr5:1765569-1781769 (-)
C3H/HeJ	MGP_C3HHeJ_G0006489	lincRNA gene	Chr5:1772689-1787419 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0006705	lincRNA gene	Chr5:2012406-2030076 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005979	lincRNA gene	Chr5:1697118-1709459 (-)
CAST/EiJ	MGP_CASTEiJ_G0006418	lincRNA gene	Chr5:1745427-1759343 (-)
CBA/J	MGP_CBAJ_G0006472	lincRNA gene	Chr5:1956354-1974099 (-)
DBA/2J	MGP_DBA2J_G0006493	lincRNA gene	Chr5:1716438-1732399 (-)
FVB/NJ	MGP_FVBNJ_G0006514	lincRNA gene	Chr5:1586647-1600072 (-)
LP/J	MGP_LPJ_G0006573	lincRNA gene	Chr5:1745538-1762193 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006501	lincRNA gene	Chr5:1822712-1841145 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006709	lincRNA gene	Chr5:1670771-1685914 (-)
PWK/PhJ	MGP_PWKPhJ_G0006356	lincRNA gene	Chr5:1637151-1654549 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006265	lincRNA gene	Chr5:1939690-1951784 (-)
WSB/EiJ	MGP_WSBEiJ_G0006465	lincRNA gene	Chr5:1681639-1697602 (-)

Homology

• Gene Tree
  Gm42744
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000105560 (Evidence)
• NCBI Gene
  102631881

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105560	Ensembl Gene Model | MGI Sequence Detail	14342	C57BL/6J
transcript	ENSMUST00000196517	Ensembl | MGI Sequence Detail	2147	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5589262

References

• Summaries
  All 6
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42744:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50016	Chr5:4849092-4849097 (-)	-1 bp