Gm42759 Gene Detail

Summary

• Symbol
  Gm42759
• Name
  predicted gene 42759

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:5662896
  NCBI Gene: 115490197
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr5:98178509-98179496 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662896	unclassified non-coding RNA gene	Chr5:98178509-98181864 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001662	unclassified gene	Chr5:99367124-99369562 (+)
A/J	MGP_AJ_G0001643	unclassified gene	Chr5:95686522-95689030 (+)
AKR/J	MGP_AKRJ_G0001628	unclassified gene	Chr5:98868086-98870513 (+)
BALB/cJ	MGP_BALBcJ_G0001639	unclassified gene	Chr5:96697561-96699991 (+)
C3H/HeJ	MGP_C3HHeJ_G0001616	unclassified gene	Chr5:99201494-99203929 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001756	unclassified gene	Chr5:103530605-103533032 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001433	unclassified gene	Chr5:91005533-91008061 (+)
CAST/EiJ	MGP_CASTEiJ_G0001588	unclassified gene	Chr5:97823790-97826218 (+)
CBA/J	MGP_CBAJ_G0001607	unclassified gene	Chr5:107116502-107118932 (+)
DBA/2J	MGP_DBA2J_G0001610	unclassified gene	Chr5:95884472-95886912 (+)
FVB/NJ	MGP_FVBNJ_G0001619	unclassified gene	Chr5:94700484-94702923 (+)
LP/J	MGP_LPJ_G0001666	unclassified gene	Chr5:99983868-99986304 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001601	unclassified gene	Chr5:112196439-112198876 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001746	unclassified gene	Chr5:98303888-98306324 (+)
PWK/PhJ	MGP_PWKPhJ_G0001546	unclassified gene	Chr5:94293326-94295838 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001512	unclassified gene	Chr5:95986020-95988472 (+)
WSB/EiJ	MGP_WSBEiJ_G0001607	unclassified gene	Chr5:98626853-98629285 (+)

Homology

• Gene Tree
  Gm42759
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000106518 (Evidence)
• NCBI Gene
  115490197

Representative Sequences			Length	Strain/Species
genomic	115490197	NCBI Gene Model | MGI Sequence Detail	988	C57BL/6J
transcript	XR_004691361	RefSeq | MGI Sequence Detail	988	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42759:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47433	Chr5:98178554-98178583 (+)	60 bp
Tssr47434	Chr5:98178584-98178595 (+)	81 bp
Tssr47435	Chr5:98178954-98178969 (+)	453 bp
Tssr47436	Chr5:98179123-98179148 (+)	627 bp
Tssr47437	Chr5:98179158-98179169 (+)	655 bp