Gm42778 Gene Detail

Summary

• Symbol
  Gm42778
• Name
  predicted gene 42778

• Feature Type
  unclassified gene
• IDs
  MGI:5662915
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:111126531-111127083 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  76 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662915	unclassified gene	Chr5:111126531-111127083 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001691	unclassified gene	Chr5:113461647-113462198 (+)
A/J	MGP_AJ_G0001668	unclassified gene	Chr5:109074266-109074817 (+)
AKR/J	MGP_AKRJ_G0001656	unclassified gene	Chr5:112529354-112529906 (+)
BALB/cJ	MGP_BALBcJ_G0001665	unclassified gene	Chr5:110443416-110443967 (+)
C3H/HeJ	MGP_C3HHeJ_G0001644	unclassified gene	Chr5:112975380-112975932 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001786	unclassified gene	Chr5:117922637-117923189 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001458	unclassified gene	Chr5:103910063-103910617 (+)
CAST/EiJ	MGP_CASTEiJ_G0001616	unclassified gene	Chr5:111834233-111834785 (+)
CBA/J	MGP_CBAJ_G0001635	unclassified gene	Chr5:122351416-122351968 (+)
DBA/2J	MGP_DBA2J_G0001639	unclassified gene	Chr5:109148223-109148775 (+)
FVB/NJ	MGP_FVBNJ_G0001647	unclassified gene	Chr5:107818715-107819266 (+)
LP/J	MGP_LPJ_G0001694	unclassified gene	Chr5:114012831-114013382 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001629	unclassified gene	Chr5:126998560-126999111 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001775	unclassified gene	Chr5:111973074-111973625 (+)
PWK/PhJ	MGP_PWKPhJ_G0001574	unclassified gene	Chr5:107733140-107733692 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001540	unclassified gene	Chr5:109445786-109446337 (+)
WSB/EiJ	MGP_WSBEiJ_G0001635	unclassified gene	Chr5:112458920-112459472 (+)

Homology

• Gene Tree
  Gm42778
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000105112 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105112	Ensembl Gene Model | MGI Sequence Detail	553	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42778:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47923	Chr5:111126522-111126542 (+)	1 bp