Gm42788 Gene Detail

Summary

• Symbol
  Gm42788
• Name
  predicted gene 42788

• Feature Type
  lncRNA gene
• IDs
  MGI:5662925
  NCBI Gene: 105242579
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:149081073-149090350 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  338 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662925	lncRNA gene	Chr5:149081073-149090350 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006873	lincRNA gene	Chr5:154954223-154963502 (+)
A/J	MGP_AJ_G0006867	lincRNA gene	Chr5:148347616-148356889 (+)
AKR/J	MGP_AKRJ_G0006837	lincRNA gene	Chr5:152924476-152936346 (+)
BALB/cJ	MGP_BALBcJ_G0006843	lincRNA gene	Chr5:149594255-149603532 (+)
C3H/HeJ	MGP_C3HHeJ_G0006788	lincRNA gene	Chr5:153913004-153922281 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007008	lincRNA gene	Chr5:160654830-160664107 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006259	lincRNA gene	Chr5:142709427-142718421 (+)
CAST/EiJ	MGP_CASTEiJ_G0006707	lincRNA gene	Chr5:153522592-153531836 (+)
CBA/J	MGP_CBAJ_G0006770	lincRNA gene	Chr5:167375093-167384370 (+)
DBA/2J	MGP_DBA2J_G0006790	lincRNA gene	Chr5:148004609-148013886 (+)
FVB/NJ	MGP_FVBNJ_G0006813	lincRNA gene	Chr5:147255876-147265153 (+)
LP/J	MGP_LPJ_G0006873	lincRNA gene	Chr5:155652672-155661947 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006795	lincRNA gene	Chr5:169532574-169543216 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007010	lincRNA gene	Chr5:152855920-152865197 (+)
PWK/PhJ	MGP_PWKPhJ_G0006648	lincRNA gene	Chr5:147158946-147169451 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006556	lincRNA gene	Chr5:150155700-150164965 (+)
WSB/EiJ	MGP_WSBEiJ_G0006761	lincRNA gene	Chr5:153666964-153676243 (+)

Homology

• Gene Tree
  Gm42788
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000107388 (Evidence)
• NCBI Gene
  105242579

Representative Sequences			Length	Strain/Species
genomic	105242579	NCBI Gene Model | MGI Sequence Detail	9278	C57BL/6J
transcript	NR_137278	RefSeq | MGI Sequence Detail	1667	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42788:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49875	Chr5:149081067-149081093 (+)	7 bp