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Gm42794 Gene Detail
Summary
  • Symbol
    Gm42794
  • Name
    predicted gene 42794
  • Feature Type
    lncRNA gene
  • IDs
    MGI:5662931
  • Alliance
    gene page
  • Transcription Start Sites
    13 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:87903460-87998719 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, Syntenic
Strain
Comparison
more
  • SNPs within 2kb
    2769 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5662931
 lncRNA gene Chr5:87903460-87998719 (-)
129S1/SvImJ MGP_129S1SvImJ_G0004109
 antisense lncRNA gene Chr5:88800334-88803863 (-)
A/J MGP_AJ_G0004090
 antisense lncRNA gene Chr5:85181037-85184490 (-)
AKR/J MGP_AKRJ_G0004068
 antisense lncRNA gene Chr5:88003194-88006723 (-)
BALB/cJ MGP_BALBcJ_G0004076
 antisense lncRNA gene Chr5:86100627-86104085 (-)
C3H/HeJ MGP_C3HHeJ_G0004022
 antisense lncRNA gene Chr5:88404160-88408352 (-)
C57BL/6NJ MGP_C57BL6NJ_G0004224
 antisense lncRNA gene Chr5:92458203-92461658 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0003701
 antisense lncRNA gene Chr5:80795560-80799316 (-)
CAST/EiJ MGP_CASTEiJ_G0003985
 antisense lncRNA gene Chr5:87793427-87796999 (-)
CBA/J MGP_CBAJ_G0004016
 antisense lncRNA gene Chr5:95371474-95374999 (-)
DBA/2J MGP_DBA2J_G0004031
 antisense lncRNA gene Chr5:85354323-85357849 (-)
FVB/NJ MGP_FVBNJ_G0004050
 antisense lncRNA gene Chr5:84263670-84267079 (-)
LP/J MGP_LPJ_G0004111
 antisense lncRNA gene Chr5:89213757-89217219 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0004039
 antisense lncRNA gene Chr5:100446907-100461547 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0004220
 antisense lncRNA gene Chr5:87562607-87566059 (-)
PWK/PhJ MGP_PWKPhJ_G0003938
 antisense lncRNA gene Chr5:84335757-84339271 (-)
SPRET/EiJ MGP_SPRETEiJ_G0003883
 antisense lncRNA gene Chr5:86979377-86982919 (-)
WSB/EiJ MGP_WSBEiJ_G0004020
 antisense lncRNA gene Chr5:87956833-87960367 (-)



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    29
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000104839 Ensembl Gene Model | MGI Sequence Detail 95260 C57BL/6J ±  kb
transcript ENSMUST00000250821 Ensembl | MGI Sequence Detail 1662 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 2
  • Earliest
    J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
  • Latest
    J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory