Gm42859 Pseudogene Detail

Summary

• Symbol
  Gm42859
• Name
  predicted gene 42859

• Feature Type
  pseudogene
• IDs
  MGI:5662996
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:145346458-145346650 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662996	pseudogene	Chr5:145346458-145346650 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013312	pseudogene	Chr5:150847314-150847506 (+)
A/J	MGP_AJ_G0013293	pseudogene	Chr5:144364113-144364305 (+)
AKR/J	MGP_AKRJ_G0013257	pseudogene	Chr5:148870189-148870381 (+)
BALB/cJ	MGP_BALBcJ_G0013271	pseudogene	Chr5:145639837-145640029 (+)
C3H/HeJ	MGP_C3HHeJ_G0013119	pseudogene	Chr5:149706543-149706735 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013639	pseudogene	Chr5:156366614-156366806 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012840	pseudogene	Chr5:149289395-149289587 (+)
CBA/J	MGP_CBAJ_G0013088	pseudogene	Chr5:162796176-162796368 (+)
DBA/2J	MGP_DBA2J_G0013171	pseudogene	Chr5:144077029-144077221 (+)
FVB/NJ	MGP_FVBNJ_G0013170	pseudogene	Chr5:143332865-143333057 (+)
LP/J	MGP_LPJ_G0013239	pseudogene	Chr5:151471351-151471543 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013189	pseudogene	Chr5:165123629-165123821 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013643	pseudogene	Chr5:148788755-148788947 (+)
PWK/PhJ	MGP_PWKPhJ_G0012655	pseudogene	Chr5:143262795-143262987 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012421	pseudogene	Chr5:138476253-138476446 (+)
WSB/EiJ	MGP_WSBEiJ_G0011040	pseudogene	Chr17:11177507-11177700 (+)

Homology

• Gene Tree
  Gm42859
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Gm42859
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000105764 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105764	Ensembl Gene Model | MGI Sequence Detail	193	C57BL/6J
transcript	ENSMUST00000199572	Ensembl | MGI Sequence Detail	193	Not Applicable

References

• Summaries
  All 12

  Phenotypes 10
• Earliest
  J:263525 Scheer N, et al., In vivo responses of the human and murine pregnane X receptor to dexamethasone in mice. Drug Metab Dispos. 2010 Jul;38(7):1046-53
• Latest
  J:345093 Heintz MM, et al., Human CYP2B6 produces oxylipins from polyunsaturated fatty acids and reduces diet-induced obesity. PLoS One. 2022;17(12):e0277053