Gm42878 Gene Detail

Summary

• Symbol
  Gm42878
• Name
  predicted gene 42878

• Feature Type
  protein coding gene
• IDs
  MGI:5663015
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:121656676-121683545 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  573 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663015	protein coding gene	Chr5:121656676-121683545 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0030031	protein coding gene	Chr5:125010896-125041526 (-)
A/J	MGP_AJ_G0029996	protein coding gene	Chr5:119861660-119890062 (-)
AKR/J	MGP_AKRJ_G0029932	protein coding gene	Chr5:123738812-123765344 (-)
BALB/cJ	MGP_BALBcJ_G0030007	protein coding gene	Chr5:121244616-121275378 (-)
C3H/HeJ	MGP_C3HHeJ_G0029724	protein coding gene	Chr5:124306203-124341369 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0030460	protein coding gene	Chr5:129768138-129801251 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0027686	protein coding gene	Chr5:114536780-114563461 (-)
CAST/EiJ	MGP_CASTEiJ_G0029133	protein coding gene	Chr5:123416061-123447108 (-)
CBA/J	MGP_CBAJ_G0029694	protein coding gene	Chr5:134872878-134913033 (-)
DBA/2J	MGP_DBA2J_G0029844	protein coding gene	Chr5:119932059-119958896 (-)
FVB/NJ	MGP_FVBNJ_G0029800	protein coding gene	Chr5:118888181-118916158 (-)
LP/J	MGP_LPJ_G0029933	protein coding gene	Chr5:125524849-125558147 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0029831	protein coding gene	Chr5:138723563-138756111 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0030501	protein coding gene	Chr5:123259647-123292771 (-)
PWK/PhJ	MGP_PWKPhJ_G0028847	protein coding gene	Chr5:118707528-118735562 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0028684	protein coding gene	Chr5:121016998-121044859 (-)
WSB/EiJ	MGP_WSBEiJ_G0029208	protein coding gene	Chr5:123913443-123941838 (-)

Homology

• Gene Tree
  Gm42878
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm42878
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000105340 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105340	Ensembl Gene Model | MGI Sequence Detail	26870	C57BL/6J
transcript	ENSMUST00000125946	Ensembl | MGI Sequence Detail	4783	Not Applicable
polypeptide	ENSMUSP00000142503	Ensembl | MGI Sequence Detail	471	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR050205 Calcium-dependent Serine/Threonine Protein Kinases
  IPR027442 MAP kinase activated protein kinase, C-terminal
  IPR000719 Protein kinase domain
  IPR011009 Protein kinase-like domain superfamily
  IPR008271 Serine/threonine-protein kinase, active site

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm42878:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr53037	Chr5:121665323-121665332 (-)	18,217 bp
Tssr53036	Chr5:121665287-121665321 (-)	18,241 bp