Gm42883 Pseudogene Detail

Summary

• Symbol
  Gm42883
• Name
  predicted gene 42883

• Feature Type
  pseudogene
• IDs
  MGI:5663020
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:147376200-147376421 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663020	pseudogene	Chr5:147376200-147376421 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013324	pseudogene	Chr5:153105851-153106072 (+)
A/J	MGP_AJ_G0013306	pseudogene	Chr5:146609949-146610170 (+)
AKR/J	MGP_AKRJ_G0013269	pseudogene	Chr5:151113247-151113468 (+)
BALB/cJ	MGP_BALBcJ_G0013284	pseudogene	Chr5:147822296-147822517 (+)
C3H/HeJ	MGP_C3HHeJ_G0013132	pseudogene	Chr5:152084962-152085183 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013653	pseudogene	Chr5:158694978-158695199 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011786	pseudogene	Chr5:141022219-141022439 (+)
CAST/EiJ	MGP_CASTEiJ_G0012851	pseudogene	Chr5:151657197-151657418 (+)
CBA/J	MGP_CBAJ_G0013101	pseudogene	Chr5:165336532-165336753 (+)
DBA/2J	MGP_DBA2J_G0013186	pseudogene	Chr5:146292340-146292561 (+)
FVB/NJ	MGP_FVBNJ_G0013182	pseudogene	Chr5:145495580-145495801 (+)
LP/J	MGP_LPJ_G0013254	pseudogene	Chr5:153802145-153802366 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013201	pseudogene	Chr5:167593348-167593569 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013656	pseudogene	Chr5:151026169-151026390 (+)
PWK/PhJ	MGP_PWKPhJ_G0012665	pseudogene	Chr5:145390994-145391215 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012450	pseudogene	Chr5:148352700-148353503 (+)
WSB/EiJ	MGP_WSBEiJ_G0012892	pseudogene	Chr5:151835693-151835914 (+)

Homology

• Gene Tree
  Gm42883
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107085 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107085	Ensembl Gene Model | MGI Sequence Detail	222	C57BL/6J
transcript	ENSMUST00000202594	Ensembl | MGI Sequence Detail	222	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42883:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49828	Chr5:147376142-147376150 (+)	-54 bp