Gm42889 Gene Detail

Summary

• Symbol
  Gm42889
• Name
  predicted gene 42889

• Feature Type
  lncRNA gene
• IDs
  MGI:5663026
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:67509473-67533188 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  1047 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663026	lncRNA gene	Chr6:67509473-67533188 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006980	lincRNA gene	Chr6:67546888-67571722 (+)
A/J	MGP_AJ_G0006975	lincRNA gene	Chr6:64624334-64647856 (+)
AKR/J	MGP_AKRJ_G0006945	lincRNA gene	Chr6:66647408-66673051 (+)
BALB/cJ	MGP_BALBcJ_G0006951	lincRNA gene	Chr6:64990863-65014433 (+)
C3H/HeJ	MGP_C3HHeJ_G0006973	lincRNA gene	Chr6:117464255-117493468 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007114	lincRNA gene	Chr6:69146030-69169709 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006358	lincRNA gene	Chr6:61769619-61793916 (+)
CAST/EiJ	MGP_CASTEiJ_G0006811	lincRNA gene	Chr6:66935020-66970389 (+)
CBA/J	MGP_CBAJ_G0006877	lincRNA gene	Chr6:71961056-72004336 (+)
DBA/2J	MGP_DBA2J_G0006897	lincRNA gene	Chr6:64292721-64316626 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0006980	lincRNA gene	Chr6:67488799-67513790 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0006750	lincRNA gene	Chr6:63471143-63521303 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006660	lincRNA gene	Chr6:66179998-66222967 (+)
WSB/EiJ	MGP_WSBEiJ_G0006866	lincRNA gene	Chr6:66886893-66911625 (+)

Homology

• Gene Tree
  Gm42889
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000105650 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105650	Ensembl Gene Model | MGI Sequence Detail	23716	C57BL/6J
transcript	ENSMUST00000199480	Ensembl | MGI Sequence Detail	660	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42889:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1870	Chr6:67510421-67510453 (+)	964 bp
Tssr1871	Chr6:67510785-67510802 (+)	1,321 bp