Gm42957 Gene Detail

Summary

• Symbol
  Gm42957
• Name
  predicted gene 42957

• Feature Type
  protein coding gene
• IDs
  MGI:5663094
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr3:96542790-96560417 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  403 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663094	protein coding gene	Chr3:96542790-96560417 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0027626	protein coding gene	Chr3:97522256-97539909 (+)
A/J	MGP_AJ_G0027588	protein coding gene	Chr3:94402061-94419694 (+)
AKR/J	MGP_AKRJ_G0027555	protein coding gene	Chr3:96626368-96643995 (+)
BALB/cJ	MGP_BALBcJ_G0027598	protein coding gene	Chr3:94212472-94230099 (+)
C3H/HeJ	MGP_C3HHeJ_G0027330	protein coding gene	Chr3:96934131-96951752 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0028044	protein coding gene	Chr3:101079090-101099603 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0025385	protein coding gene	Chr3:90679114-90697546 (+)
CAST/EiJ	MGP_CASTEiJ_G0026785	protein coding gene	Chr3:96187375-96206505 (+)
CBA/J	MGP_CBAJ_G0027305	protein coding gene	Chr3:104778357-104799976 (+)
DBA/2J	MGP_DBA2J_G0027448	protein coding gene	Chr3:93732203-93750129 (+)
FVB/NJ	MGP_FVBNJ_G0027417	protein coding gene	Chr3:91743640-91761923 (+)
LP/J	MGP_LPJ_G0027553	protein coding gene	Chr3:98807197-98824826 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0027443	protein coding gene	Chr3:110871213-110888839 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0028098	protein coding gene	Chr3:96244883-96262506 (+)
PWK/PhJ	MGP_PWKPhJ_G0026510	protein coding gene	Chr3:93567222-93585142 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0026332	protein coding gene	Chr3:94543761-94565040 (+)
WSB/EiJ	MGP_WSBEiJ_G0026863	protein coding gene	Chr3:96693101-96710730 (+)

Homology

• Gene Tree
  Gm42957
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm42957
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000106447 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106447	Ensembl Gene Model | MGI Sequence Detail	17628	C57BL/6J
transcript	ENSMUST00000137564	Ensembl | MGI Sequence Detail	3624	Not Applicable
polypeptide	ENSMUSP00000121011	Ensembl | MGI Sequence Detail	366	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR013519 Integrin alpha beta-propellor
  IPR028994 Integrin alpha, N-terminal
  IPR008733 Peroxisomal biogenesis factor 11

References

• Summaries
  All 7

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm42957:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30745	Chr3:96542778-96542791 (+)	-5 bp
Tssr30746	Chr3:96542933-96543002 (+)	178 bp
Tssr30747	Chr3:96543133-96543153 (+)	353 bp
Tssr30748	Chr3:96543156-96543184 (+)	380 bp