Gm42984 Gene Detail

Summary

• Symbol
  Gm42984
• Name
  predicted gene 42984

• Feature Type
  lncRNA gene
• IDs
  MGI:5663121
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:44383929-44400890 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  582 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663121	lncRNA gene	Chr5:44383929-44400890 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004074	antisense lncRNA gene	Chr5:42868049-42886156 (+)
A/J	MGP_AJ_G0004055	antisense lncRNA gene	Chr5:41391957-41409726 (+)
AKR/J	MGP_AKRJ_G0004033	antisense lncRNA gene	Chr5:42850615-42867605 (+)
BALB/cJ	MGP_BALBcJ_G0004041	antisense lncRNA gene	Chr5:41862985-41880167 (+)
C3H/HeJ	MGP_C3HHeJ_G0003987	antisense lncRNA gene	Chr5:42837628-42855450 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004190	antisense lncRNA gene	Chr5:44929525-44947540 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003668	antisense lncRNA gene	Chr5:38609240-38626058 (+)
CAST/EiJ	MGP_CASTEiJ_G0003951	antisense lncRNA gene	Chr5:41956530-41973554 (+)
CBA/J	MGP_CBAJ_G0003981	antisense lncRNA gene	Chr5:46110675-46131041 (+)
DBA/2J	MGP_DBA2J_G0003996	antisense lncRNA gene	Chr5:41478334-41495354 (+)
FVB/NJ	MGP_FVBNJ_G0004015	antisense lncRNA gene	Chr5:40909293-40927698 (+)
LP/J	MGP_LPJ_G0004076	antisense lncRNA gene	Chr5:43331928-43349137 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004004	antisense lncRNA gene	Chr5:46918094-46935066 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004185	antisense lncRNA gene	Chr5:42341098-42358079 (+)
PWK/PhJ	MGP_PWKPhJ_G0003904	antisense lncRNA gene	Chr5:40616277-40633415 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003849	antisense lncRNA gene	Chr5:41785008-41801774 (+)
WSB/EiJ	MGP_WSBEiJ_G0003986	antisense lncRNA gene	Chr5:42436728-42453635 (+)

Homology

• Gene Tree
  Gm42984
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000104784 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104784	Ensembl Gene Model | MGI Sequence Detail	16962	C57BL/6J
transcript	ENSMUST00000195990	Ensembl | MGI Sequence Detail	987	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42984:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46133	Chr5:44384079-44384090 (+)	156 bp
Tssr46134	Chr5:44384122-44384160 (+)	212 bp