Gm42988 Pseudogene Detail

Summary

• Symbol
  Gm42988
• Name
  predicted gene 42988

• Feature Type
  pseudogene
• IDs
  MGI:5663125
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:52876988-52877212 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic

Strain
Comparison

• SNPs within 2kb
  30 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663125	pseudogene	Chr14:52876988-52877212 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011109	pseudogene	Chr14:46698352-46698576 (+)
A/J	MGP_AJ_G0011106	pseudogene	Chr14:45479437-45479661 (+)
AKR/J	MGP_AKRJ_G0011063	pseudogene	Chr14:47129569-47129793 (+)
BALB/cJ	MGP_BALBcJ_G0011079	pseudogene	Chr14:45582904-45583128 (+)
C3H/HeJ	MGP_C3HHeJ_G0010981	pseudogene	Chr14:46887696-46887920 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011368	pseudogene	Chr14:48761655-48761879 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009945	pseudogene	Chr14:44584374-44584594 (+)
CAST/EiJ	MGP_CASTEiJ_G0010795	pseudogene	Chr14:43849771-43849995 (+)
CBA/J	MGP_CBAJ_G0010953	pseudogene	Chr14:50259568-50259792 (+)
DBA/2J	MGP_DBA2J_G0011001	pseudogene	Chr14:45240045-45240269 (+)
FVB/NJ	MGP_FVBNJ_G0011007	pseudogene	Chr14:44813685-44813909 (+)
LP/J	MGP_LPJ_G0011087	pseudogene	Chr14:47324556-47324780 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010997	pseudogene	Chr14:49694101-49694325 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011347	pseudogene	Chr14:46468996-46469220 (+)
PWK/PhJ	MGP_PWKPhJ_G0010664	pseudogene	Chr14:41993852-41994076 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010488	pseudogene	Chr14:42508256-42508480 (+)
WSB/EiJ	MGP_WSBEiJ_G0010846	pseudogene	Chr14:46788971-46789195 (+)

Homology

• Gene Tree
  Gm42988
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm42988
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105159 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105159	Ensembl Gene Model | MGI Sequence Detail	225	C57BL/6J
transcript	ENSMUST00000198116	Ensembl | MGI Sequence Detail	225	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;