Gm43000 Gene Detail

Summary

• Symbol
  Gm43000
• Name
  predicted gene 43000

• Feature Type
  lncRNA gene
• IDs
  MGI:5663137
  NCBI Gene: 115490168
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:16198955-16202837 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  238 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663137	lncRNA gene	Chr5:16195247-16207958 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004036	antisense lncRNA gene	Chr5:13328197-13332063 (-)
A/J	MGP_AJ_G0004016	antisense lncRNA gene	Chr5:12921477-12925359 (-)
AKR/J	MGP_AKRJ_G0003994	antisense lncRNA gene	Chr5:13544590-13548472 (-)
BALB/cJ	MGP_BALBcJ_G0004003	antisense lncRNA gene	Chr5:13361815-13365697 (-)
C3H/HeJ	MGP_C3HHeJ_G0003949	antisense lncRNA gene	Chr5:13486894-13490776 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004151	antisense lncRNA gene	Chr5:14599439-14603291 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003631	antisense lncRNA gene	Chr5:11300188-11304076 (-)
CAST/EiJ	MGP_CASTEiJ_G0003912	antisense lncRNA gene	Chr5:12793835-12797697 (-)
CBA/J	MGP_CBAJ_G0003943	antisense lncRNA gene	Chr5:14465021-14468993 (-)
DBA/2J	MGP_DBA2J_G0003957	antisense lncRNA gene	Chr5:13227031-13230913 (-)
FVB/NJ	MGP_FVBNJ_G0003977	antisense lncRNA gene	Chr5:12662054-12665936 (-)
LP/J	MGP_LPJ_G0004038	antisense lncRNA gene	Chr5:13744142-13748008 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003965	antisense lncRNA gene	Chr5:15408265-15412147 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004145	antisense lncRNA gene	Chr5:13131882-13135764 (-)
PWK/PhJ	MGP_PWKPhJ_G0003866	antisense lncRNA gene	Chr5:12286164-12290046 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003811	antisense lncRNA gene	Chr5:12484344-12488216 (-)
WSB/EiJ	MGP_WSBEiJ_G0003948	antisense lncRNA gene	Chr5:13132193-13136075 (-)

Homology

• Gene Tree
  Gm43000
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000104886 (Evidence)
• NCBI Gene
  115490168

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104886	Ensembl Gene Model | MGI Sequence Detail	3883	C57BL/6J
transcript	ENSMUST00000198482	Ensembl | MGI Sequence Detail	3343	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;