Gm43001 Gene Detail

Summary

• Symbol
  Gm43001
• Name
  predicted gene 43001

• Feature Type
  lncRNA gene
• IDs
  MGI:5663138
  NCBI Gene: 108169071
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:129440626-129441785 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  171 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663138	lncRNA gene	Chr5:129440626-129441785 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006825	lincRNA gene	Chr5:133465409-133466568 (+)
A/J	MGP_AJ_G0006819	lincRNA gene	Chr5:127851808-127852967 (+)
AKR/J	MGP_AKRJ_G0006789	lincRNA gene	Chr5:132001514-132002673 (+)
BALB/cJ	MGP_BALBcJ_G0006795	lincRNA gene	Chr5:129200050-129201209 (+)
C3H/HeJ	MGP_C3HHeJ_G0006740	lincRNA gene	Chr5:132563037-132564196 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006959	lincRNA gene	Chr5:138562912-138564071 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006215	lincRNA gene	Chr5:122237721-122238885 (+)
CAST/EiJ	MGP_CASTEiJ_G0006662	lincRNA gene	Chr5:131835577-131836736 (+)
CBA/J	MGP_CBAJ_G0006722	lincRNA gene	Chr5:143954455-143955614 (+)
DBA/2J	MGP_DBA2J_G0006742	lincRNA gene	Chr5:127820079-127821238 (+)
FVB/NJ	MGP_FVBNJ_G0006766	lincRNA gene	Chr5:126901545-126902704 (+)
LP/J	MGP_LPJ_G0006826	lincRNA gene	Chr5:133968907-133970066 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006749	lincRNA gene	Chr5:147348665-147349824 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006962	lincRNA gene	Chr5:131678694-131679853 (+)
PWK/PhJ	MGP_PWKPhJ_G0006602	lincRNA gene	Chr5:126738068-126739306 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006508	lincRNA gene	Chr5:129264420-129265577 (+)
WSB/EiJ	MGP_WSBEiJ_G0006713	lincRNA gene	Chr5:132362484-132363643 (+)

Homology

• Gene Tree
  Gm43001
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm43001
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000104681 (Evidence)
• NCBI Gene
  108169071

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104681	Ensembl Gene Model | MGI Sequence Detail	1160	C57BL/6J
transcript	ENSMUST00000198925	Ensembl | MGI Sequence Detail	603	Not Applicable

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm43001:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49005	Chr5:129440607-129440645 (+)	0 bp