Gm43017 Gene Detail

Summary

• Symbol
  Gm43017
• Name
  predicted gene 43017

• Feature Type
  lncRNA gene
• IDs
  MGI:5663154
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:3594037-3594788 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663154	lncRNA gene	Chr5:3594037-3594788 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037019	sense intronic lncRNA gene	Chr5:357128-357879 (+)
A/J	MGP_AJ_G0037007	sense intronic lncRNA gene	Chr5:239920-240671 (+)
AKR/J	MGP_AKRJ_G0036955	sense intronic lncRNA gene	Chr5:229256-230007 (+)
BALB/cJ	MGP_BALBcJ_G0036998	sense intronic lncRNA gene	Chr5:472384-473135 (+)
C3H/HeJ	MGP_C3HHeJ_G0036685	sense intronic lncRNA gene	Chr5:408088-408839 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037511	sense intronic lncRNA gene	Chr5:616759-617510 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034562	sense intronic lncRNA gene	Chr5:280518-281224 (+)
CAST/EiJ	MGP_CASTEiJ_G0035873	sense intronic lncRNA gene	Chr5:424545-425271 (+)
CBA/J	MGP_CBAJ_G0036660	sense intronic lncRNA gene	Chr5:511982-512733 (+)
DBA/2J	MGP_DBA2J_G0036835	sense intronic lncRNA gene	Chr5:385503-386254 (+)
FVB/NJ	MGP_FVBNJ_G0036785	sense intronic lncRNA gene	Chr5:294235-294986 (+)
LP/J	MGP_LPJ_G0036882	sense intronic lncRNA gene	Chr5:397754-398505 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036793	sense intronic lncRNA gene	Chr5:317112-317868 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037628	sense intronic lncRNA gene	Chr5:360484-361235 (+)
PWK/PhJ	MGP_PWKPhJ_G0035565	sense intronic lncRNA gene	Chr5:366495-367244 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035374	sense intronic lncRNA gene	Chr5:642511-643235 (+)
WSB/EiJ	MGP_WSBEiJ_G0036073	sense intronic lncRNA gene	Chr5:383887-384638 (+)

Homology

• Gene Tree
  Gm43017
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105656 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105656	Ensembl Gene Model | MGI Sequence Detail	752	C57BL/6J
transcript	ENSMUST00000198296	Ensembl | MGI Sequence Detail	752	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43017:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45053	Chr5:3594082-3594112 (+)	60 bp