Gm43071 Gene Detail

Summary

• Symbol
  Gm43071
• Name
  predicted gene 43071

• Feature Type
  unclassified gene
• IDs
  MGI:5663208
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr3:106474921-106476952 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663208	unclassified gene	Chr3:106474921-106476952 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001224	unclassified gene	Chr3:108034853-108036884 (+)
A/J	MGP_AJ_G0001206	unclassified gene	Chr3:104603615-104605647 (+)
AKR/J	MGP_AKRJ_G0001191	unclassified gene	Chr3:107158753-107160784 (+)
BALB/cJ	MGP_BALBcJ_G0001200	unclassified gene	Chr3:104303397-104305429 (+)
C3H/HeJ	MGP_C3HHeJ_G0001178	unclassified gene	Chr3:107490827-107492859 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001314	unclassified gene	Chr3:112061072-112063103 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001021	unclassified gene	Chr3:100785258-100787283 (+)
CAST/EiJ	MGP_CASTEiJ_G0001160	unclassified gene	Chr3:106865125-106867156 (+)
CBA/J	MGP_CBAJ_G0001170	unclassified gene	Chr3:115849466-115851498 (+)
DBA/2J	MGP_DBA2J_G0001174	unclassified gene	Chr3:103810080-103812111 (+)
FVB/NJ	MGP_FVBNJ_G0001184	unclassified gene	Chr3:101715677-101717615 (+)
LP/J	MGP_LPJ_G0001232	unclassified gene	Chr3:109411345-109413376 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001173	unclassified gene	Chr3:121946397-121948429 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001306	unclassified gene	Chr3:106726324-106728356 (+)
PWK/PhJ	MGP_PWKPhJ_G0001118	unclassified gene	Chr3:103545240-103547271 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001093	unclassified gene	Chr3:104856171-104858201 (+)
WSB/EiJ	MGP_WSBEiJ_G0001178	unclassified gene	Chr3:107284443-107286474 (+)

Homology

• Gene Tree
  Gm43071
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000105272 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105272	Ensembl Gene Model | MGI Sequence Detail	2032	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43071:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31119	Chr3:106473227-106473232 (+)	-1,691 bp
Tssr31120	Chr3:106475180-106475192 (+)	265 bp
Tssr31121	Chr3:106475371-106475389 (+)	459 bp
Tssr31122	Chr3:106476659-106476676 (+)	1,747 bp
Tssr31123	Chr3:106476738-106476754 (+)	1,825 bp
Tssr31124	Chr3:106476923-106476937 (+)	2,009 bp