Gm43315 Pseudogene Detail

Summary

• Symbol
  Gm43315
• Name
  predicted gene 43315

• Feature Type
  pseudogene
• IDs
  MGI:5663452
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:56314680-56314992 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663452	pseudogene	Chr5:56314680-56314992 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013091	pseudogene	Chr5:55349898-55350210 (+)
A/J	MGP_AJ_G0013078	pseudogene	Chr5:53321959-53322271 (+)
AKR/J	MGP_AKRJ_G0013043	pseudogene	Chr5:55107652-55107964 (+)
BALB/cJ	MGP_BALBcJ_G0013055	pseudogene	Chr5:53882457-53882769 (+)
C3H/HeJ	MGP_C3HHeJ_G0012907	pseudogene	Chr5:55335151-55335463 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013416	pseudogene	Chr5:57564387-57564699 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011605	pseudogene	Chr5:49951032-49951343 (+)
CAST/EiJ	MGP_CASTEiJ_G0012638	pseudogene	Chr5:54337548-54337860 (+)
CBA/J	MGP_CBAJ_G0012874	pseudogene	Chr5:59430144-59430456 (+)
DBA/2J	MGP_DBA2J_G0012952	pseudogene	Chr5:53393697-53394009 (+)
FVB/NJ	MGP_FVBNJ_G0012959	pseudogene	Chr5:52693193-52693505 (+)
LP/J	MGP_LPJ_G0013026	pseudogene	Chr5:55736580-55736892 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012973	pseudogene	Chr5:60759911-60760223 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013418	pseudogene	Chr5:54656559-54656871 (+)
PWK/PhJ	MGP_PWKPhJ_G0012456	pseudogene	Chr5:52452955-52453267 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012257	pseudogene	Chr5:54111373-54111678 (+)
WSB/EiJ	MGP_WSBEiJ_G0012674	pseudogene	Chr5:54751812-54752124 (+)

Homology

• Gene Tree
  Gm43315
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm43315
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105685 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105685	Ensembl Gene Model | MGI Sequence Detail	313	C57BL/6J
transcript	ENSMUST00000198120	Ensembl | MGI Sequence Detail	313	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm43315:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46281	Chr5:56314647-56314648 (+)	-32 bp