Gm43343 Gene Detail

Summary

• Symbol
  Gm43343
• Name
  predicted gene 43343

• Feature Type
  unclassified gene
• IDs
  MGI:5663480
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:66681530-66683455 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  201 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663480	unclassified gene	Chr5:66681530-66683455 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0001591	unclassified gene	Chr5:66264986-66266924 (-)
A/J	MGP_AJ_G0001572	unclassified gene	Chr5:63769403-63771341 (-)
AKR/J	MGP_AKRJ_G0001557	unclassified gene	Chr5:65818309-65820247 (-)
BALB/cJ	MGP_BALBcJ_G0001568	unclassified gene	Chr5:64466098-64468040 (-)
C3H/HeJ	MGP_C3HHeJ_G0001545	unclassified gene	Chr5:66140243-66142181 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0001686	unclassified gene	Chr5:68999259-69001184 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001371	unclassified gene	Chr5:59843618-59845557 (-)
CAST/EiJ	MGP_CASTEiJ_G0001519	unclassified gene	Chr5:65312606-65314513 (-)
CBA/J	MGP_CBAJ_G0001536	unclassified gene	Chr5:71211602-71213540 (-)
DBA/2J	MGP_DBA2J_G0001541	unclassified gene	Chr5:63793886-63795824 (-)
FVB/NJ	MGP_FVBNJ_G0001548	unclassified gene	Chr5:62981589-62983514 (-)
LP/J	MGP_LPJ_G0001595	unclassified gene	Chr5:66755055-66756993 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001531	unclassified gene	Chr5:74039377-74042133 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001674	unclassified gene	Chr5:65485411-65487338 (-)
PWK/PhJ	MGP_PWKPhJ_G0001476	unclassified gene	Chr5:62808912-62810817 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0001445	unclassified gene	Chr5:64840580-64842494 (-)
WSB/EiJ	MGP_WSBEiJ_G0001536	unclassified gene	Chr5:65713534-65715472 (-)

Homology

• Gene Tree
  Gm43343
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000107091 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107091	Ensembl Gene Model | MGI Sequence Detail	1926	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43343:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51213	Chr5:66681984-66682003 (-)	1,461 bp