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Gm43388 Gene Detail
Summary
  • Symbol
    Gm43388
  • Name
    predicted gene 43388
  • Feature Type
    lncRNA gene
  • IDs
    MGI:5663525
  • Alliance
    gene page
  • Transcription Start Sites
    12 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:19031405-19055691 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, Syntenic
Strain
Comparison
more
  • SNPs within 2kb
    944 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5663525
 lncRNA gene Chr16:19031405-19055691 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005645
 lincRNA gene Chr16:16496748-16516022 (-)
A/J MGP_AJ_G0005632
 lincRNA gene Chr16:15678736-15703193 (-)
AKR/J MGP_AKRJ_G0005611
 lincRNA gene Chr16:16301158-16327803 (-)
BALB/cJ MGP_BALBcJ_G0005612
 lincRNA gene Chr16:15840386-15865931 (-)
C3H/HeJ MGP_C3HHeJ_G0005559
 lincRNA gene Chr16:16467930-16490264 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005770
 lincRNA gene Chr16:16807696-16831258 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0005503
 lincRNA gene Chr16:16396835-16443591 (-)
CBA/J MGP_CBAJ_G0005549
 lincRNA gene Chr16:17530342-17555499 (-)
DBA/2J MGP_DBA2J_G0005564
 lincRNA gene Chr16:15573596-15598393 (-)
FVB/NJ MGP_FVBNJ_G0005591
 lincRNA gene Chr16:15659481-15683191 (-)
LP/J MGP_LPJ_G0005648
 lincRNA gene Chr16:16239699-16263629 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005576
 lincRNA gene Chr16:17145831-17170844 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005770
 lincRNA gene Chr16:16216477-16237662 (-)
PWK/PhJ MGP_PWKPhJ_G0005450
 lincRNA gene Chr16:15847731-15910618 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005369
 lincRNA gene Chr16:16107528-16136233 (-)
WSB/EiJ MGP_WSBEiJ_G0005553
 lincRNA gene Chr16:16258766-16292091 (-)



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    22
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000104927 Ensembl Gene Model | MGI Sequence Detail 24287 C57BL/6J ±  kb
transcript ENSMUST00000197818 Ensembl | MGI Sequence Detail 1291 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 2
  • Earliest
    J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
  • Latest
    J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory