Gm43403 Gene Detail

Summary

• Symbol
  Gm43403
• Name
  predicted gene 43403

• Feature Type
  lncRNA gene
• IDs
  MGI:5663540
  NCBI Gene: 108168904
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:137569448-137570087 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663540	lncRNA gene	Chr3:137568350-137570135 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003845	antisense lncRNA gene	Chr3:140883781-140885613 (-)
A/J	MGP_AJ_G0003825	antisense lncRNA gene	Chr3:135910264-135912061 (-)
AKR/J	MGP_AKRJ_G0003802	antisense lncRNA gene	Chr3:139521077-139522868 (-)
BALB/cJ	MGP_BALBcJ_G0003812	antisense lncRNA gene	Chr3:135714430-135716234 (-)
C3H/HeJ	MGP_C3HHeJ_G0003759	antisense lncRNA gene	Chr3:139842734-139844547 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003955	antisense lncRNA gene	Chr3:145751820-145753605 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003456	antisense lncRNA gene	Chr3:131013914-131015718 (-)
CAST/EiJ	MGP_CASTEiJ_G0003724	antisense lncRNA gene	Chr3:139612210-139614021 (-)
CBA/J	MGP_CBAJ_G0003752	antisense lncRNA gene	Chr3:150708764-150710553 (-)
DBA/2J	MGP_DBA2J_G0003766	antisense lncRNA gene	Chr3:135032856-135034653 (-)
FVB/NJ	MGP_FVBNJ_G0003787	antisense lncRNA gene	Chr3:132494094-132495897 (-)
LP/J	MGP_LPJ_G0003847	antisense lncRNA gene	Chr3:142290410-142292191 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003774	antisense lncRNA gene	Chr3:158816007-158817820 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003956	antisense lncRNA gene	Chr3:139058831-139060647 (-)
PWK/PhJ	MGP_PWKPhJ_G0003679	antisense lncRNA gene	Chr3:134777587-134779383 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003624	antisense lncRNA gene	Chr3:137154582-137156371 (-)
WSB/EiJ	MGP_WSBEiJ_G0003760	antisense lncRNA gene	Chr3:139881323-139883111 (-)

Homology

• Gene Tree
  Gm43403
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000105676 (Evidence)
• NCBI Gene
  108168904

Representative Sequences			Length	Strain/Species
genomic	108168904	NCBI Gene Model | MGI Sequence Detail	640	C57BL/6J
transcript	NR_169184	RefSeq | MGI Sequence Detail	513	ZRU/MplStud

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43403:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35855	Chr3:137570078-137570092 (-)	2 bp