Gm43434 Gene Detail

Summary

• Symbol
  Gm43434
• Name
  predicted gene 43434

• Feature Type
  lncRNA gene
• IDs
  MGI:5663571
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:54365755-54383744 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663571	lncRNA gene	Chr14:54365755-54383744 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003245	antisense lncRNA gene	Chr14:48061960-48073214 (-)
A/J	MGP_AJ_G0003221	antisense lncRNA gene	Chr14:47154642-47166570 (-)
AKR/J	MGP_AKRJ_G0003204	antisense lncRNA gene	Chr14:48860966-48872825 (-)
BALB/cJ	MGP_BALBcJ_G0003210	antisense lncRNA gene	Chr14:47120268-47131514 (-)
C3H/HeJ	MGP_C3HHeJ_G0003163	antisense lncRNA gene	Chr14:48541282-48554968 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003352	antisense lncRNA gene	Chr14:50513575-50537915 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002877	antisense lncRNA gene	Chr14:45568366-45579570 (-)
CAST/EiJ	MGP_CASTEiJ_G0003129	antisense lncRNA gene	Chr14:44774340-44787933 (-)
CBA/J	MGP_CBAJ_G0003160	antisense lncRNA gene	Chr14:52017874-52029160 (-)
DBA/2J	MGP_DBA2J_G0003165	antisense lncRNA gene	Chr14:46892280-46904204 (-)
FVB/NJ	MGP_FVBNJ_G0003184	antisense lncRNA gene	Chr14:46353807-46365353 (-)
LP/J	MGP_LPJ_G0003242	antisense lncRNA gene	Chr14:49087529-49098773 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003173	antisense lncRNA gene	Chr14:51461081-51473241 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003354	antisense lncRNA gene	Chr14:48045290-48056740 (-)
PWK/PhJ	MGP_PWKPhJ_G0003087	antisense lncRNA gene	Chr14:43421578-43433210 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003033	antisense lncRNA gene	Chr14:44019510-44031487 (-)
WSB/EiJ	MGP_WSBEiJ_G0003163	antisense lncRNA gene	Chr14:48335340-48346669 (-)

Homology

• Gene Tree
  Gm43434
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106112 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106112	Ensembl Gene Model | MGI Sequence Detail	17990	C57BL/6J
transcript	ENSMUST00000196615	Ensembl | MGI Sequence Detail	676	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43434:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr128535	Chr14:54375718-54375743 (-)	8,013 bp