Gm43449 Gene Detail

Summary

• Symbol
  Gm43449
• Name
  predicted gene 43449

• Feature Type
  lncRNA gene
• IDs
  MGI:5663586
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr5:90646947-90663790 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  607 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663586	lncRNA gene	Chr5:90646947-90663790 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004112	antisense lncRNA gene	Chr5:91580905-91597787 (-)
A/J	MGP_AJ_G0004093	antisense lncRNA gene	Chr5:87957535-87975240 (-)
AKR/J	MGP_AKRJ_G0004072	antisense lncRNA gene	Chr5:90826778-90843527 (-)
BALB/cJ	MGP_BALBcJ_G0004079	antisense lncRNA gene	Chr5:88856334-88873126 (-)
C3H/HeJ	MGP_C3HHeJ_G0004026	antisense lncRNA gene	Chr5:91243202-91259987 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004227	antisense lncRNA gene	Chr5:95242941-95261592 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0003989	antisense lncRNA gene	Chr5:90608004-90627195 (-)
CBA/J	MGP_CBAJ_G0004020	antisense lncRNA gene	Chr5:98496668-98513433 (-)
DBA/2J	MGP_DBA2J_G0004035	antisense lncRNA gene	Chr5:88041437-88058226 (-)
FVB/NJ	MGP_FVBNJ_G0004053	antisense lncRNA gene	Chr5:86900168-86916941 (-)
LP/J	MGP_LPJ_G0004114	antisense lncRNA gene	Chr5:91959766-91976544 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004042	antisense lncRNA gene	Chr5:103501628-103518409 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004223	antisense lncRNA gene	Chr5:90356950-90373712 (-)
PWK/PhJ	MGP_PWKPhJ_G0003942	antisense lncRNA gene	Chr5:87096429-87114267 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003886	antisense lncRNA gene	Chr5:89761111-89777781 (-)
WSB/EiJ	MGP_WSBEiJ_G0004024	antisense lncRNA gene	Chr5:90816138-90832975 (-)

Homology

• Gene Tree
  Gm43449
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000106788 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106788	Ensembl Gene Model | MGI Sequence Detail	16844	C57BL/6J
transcript	ENSMUST00000202955	Ensembl | MGI Sequence Detail	371	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43449:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51789	Chr5:90654559-90654581 (-)	9,220 bp
Tssr51788	Chr5:90654458-90654466 (-)	9,328 bp
Tssr51787	Chr5:90654416-90654448 (-)	9,358 bp
Tssr51786	Chr5:90652829-90652837 (-)	10,957 bp
Tssr51785	Chr5:90652216-90652238 (-)	11,563 bp
Tssr51784	Chr5:90649378-90649392 (-)	14,405 bp