Gm43464 Gene Detail

Summary

• Symbol
  Gm43464
• Name
  predicted gene 43464

• Feature Type
  lncRNA gene
• IDs
  MGI:5663601
  NCBI Gene: 115489697
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:100600022-100607400 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  79 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663601	lncRNA gene	Chr3:100599781-100608298 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006257	lincRNA gene	Chr3:101814832-101822226 (+)
A/J	MGP_AJ_G0006250	lincRNA gene	Chr3:98607195-98615343 (+)
AKR/J	MGP_AKRJ_G0006226	lincRNA gene	Chr3:100996852-101008211 (+)
BALB/cJ	MGP_BALBcJ_G0006224	lincRNA gene	Chr3:98368758-98376259 (+)
C3H/HeJ	MGP_C3HHeJ_G0006176	lincRNA gene	Chr3:101315251-101322918 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006389	lincRNA gene	Chr3:105550338-105557967 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005688	lincRNA gene	Chr3:94813598-94820913 (+)
CAST/EiJ	MGP_CASTEiJ_G0006110	lincRNA gene	Chr3:100420949-100428266 (+)
CBA/J	MGP_CBAJ_G0006160	lincRNA gene	Chr3:109163425-109182413 (+)
DBA/2J	MGP_DBA2J_G0006181	lincRNA gene	Chr3:97850900-97858744 (+)
FVB/NJ	MGP_FVBNJ_G0006202	lincRNA gene	Chr3:95782111-95790234 (+)
LP/J	MGP_LPJ_G0006262	lincRNA gene	Chr3:103178654-103187128 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006193	lincRNA gene	Chr3:115412838-115425743 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006395	lincRNA gene	Chr3:100508848-100518126 (+)
PWK/PhJ	MGP_PWKPhJ_G0006050	lincRNA gene	Chr3:97602327-97609710 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005961	lincRNA gene	Chr3:98608738-98616048 (+)
WSB/EiJ	MGP_WSBEiJ_G0006157	lincRNA gene	Chr3:101065377-101075661 (+)

Homology

• Gene Tree
  Gm43464
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm43464
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000106227 (Evidence)
• NCBI Gene
  115489697

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106227	Ensembl Gene Model | MGI Sequence Detail	7379	C57BL/6J
transcript	ENSMUST00000198003	Ensembl | MGI Sequence Detail	317	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43464:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30881	Chr3:100599757-100599786 (+)	-250 bp